3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUAAAGAGUAACG
Length
13 nucleotides
Bulged bases
5U9F|1|01|A|2268, 5U9F|1|01|C|2275
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U9F_053 not in the Motif Atlas
Homologous match to HL_7RQB_054
Geometric discrepancy: 0.1109
The information below is about HL_7RQB_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_19870.6
Basepair signature
cWW-tSH-tHH-tWW-F-F-F
Number of instances in this motif group
7

Unit IDs

5U9F|1|01|C|2264
5U9F|1|01|U|2265
5U9F|1|01|A|2266
5U9F|1|01|A|2267
5U9F|1|01|A|2268
5U9F|1|01|G|2269
5U9F|1|01|A|2270
5U9F|1|01|G|2271
5U9F|1|01|U|2272
5U9F|1|01|A|2273
5U9F|1|01|A|2274
5U9F|1|01|C|2275
5U9F|1|01|G|2276

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L16
Chain 25
50S ribosomal protein L27

Coloring options:


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