HL_5U9F_060

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

5U9F|1|01|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_060 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1565

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5U9F|1|01|U|2528
5U9F|1|01|G|2529
5U9F|1|01|A|2530
5U9F|1|01|A|2531
5U9F|1|01|G|2532
5U9F|1|01|U|2533
5U9F|1|01|A|2534
5U9F|1|01|G|2535

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 34

50S ribosomal protein L36