HL_5U9F_078

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1752

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5U9F|1|A|A|320
5U9F|1|A|A|321
5U9F|1|A|C|322
5U9F|1|A|U|323
5U9F|1|A|G|324
5U9F|1|A|A|325
5U9F|1|A|G|326
5U9F|1|A|A|327
5U9F|1|A|C|328
5U9F|1|A|A|329
5U9F|1|A|C|330
5U9F|1|A|G|331
5U9F|1|A|G|332
5U9F|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20