HL_5U9F_088

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

5U9F|1|A|C|841, 5U9F|1|A|U|842, 5U9F|1|A|U|843, 5U9F|1|A|G|844, 5U9F|1|A|A|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_088 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3357

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5U9F|1|A|C|840
5U9F|1|A|C|841
5U9F|1|A|U|842
5U9F|1|A|U|843
5U9F|1|A|G|844
5U9F|1|A|A|845
5U9F|1|A|G|846

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

30S ribosomal protein S2

Chain R

30S ribosomal protein S18