HL_5U9G_025

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGCUAACGU

Length

10 nucleotides

Bulged bases

5U9G|1|01|U|958, 5U9G|1|01|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9G_025 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2757

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5U9G|1|01|G|954
5U9G|1|01|U|955
5U9G|1|01|G|956
5U9G|1|01|C|957
5U9G|1|01|U|958
5U9G|1|01|A|959
5U9G|1|01|A|960
5U9G|1|01|C|961
5U9G|1|01|G|962
5U9G|1|01|U|963

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 02

5S ribosomal RNA; 5S rRNA

Chain 15

50S ribosomal protein L16