HL_5U9G_035

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

5U9G|1|01|A|1453, 5U9G|1|01|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9G_035 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.4421

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5U9G|1|01|C|1451
5U9G|1|01|G|1452
5U9G|1|01|A|1453
5U9G|1|01|C|1454
5U9G|1|01|G|1455
5U9G|1|01|G|1456
5U9G|1|01|U|1457
5U9G|1|01|U|1458
5U9G|1|01|G|1459

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L17