HL_5U9G_065

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5U9G|1|01|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9G_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1104

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5U9G|1|01|C|2745
5U9G|1|01|U|2746
5U9G|1|01|G|2747
5U9G|1|01|A|2748
5U9G|1|01|A|2749
5U9G|1|01|A|2750
5U9G|1|01|G|2751
5U9G|1|01|C|2752
5U9G|1|01|A|2753
5U9G|1|01|U|2754
5U9G|1|01|C|2755
5U9G|1|01|U|2756
5U9G|1|01|A|2757
5U9G|1|01|A|2758
5U9G|1|01|G|2759

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36