HL_5U9G_109

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9G_109 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.2447

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5U9G|1|01|G|2304
5U9G|1|01|U|2305
5U9G|1|01|C|2306
5U9G|1|01|G|2307
5U9G|1|01|G|2308
5U9G|1|01|A|2309
5U9G|1|01|C|2310
5U9G|1|01|A|2311
5U9G|1|01|U|2312

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 07

50S ribosomal protein L5