HL_5UD5_005

3D structure

PDB id

5UD5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the tRNA binding domain of Pyrrolysyl-tRNA synthetase bound to tRNA(Pyl)

Experimental method

X-RAY DIFFRACTION

Resolution

2.35 Å

Loop

Sequence

ACUCUAAAU

Length

9 nucleotides

Bulged bases

5UD5|1|D|U|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UD5_005 not in the Motif Atlas

Homologous match to HL_5UD5_002

Geometric discrepancy: 0.2893

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_68642.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5UD5|1|D|A|31
5UD5|1|D|C|32
5UD5|1|D|U|33
5UD5|1|D|C|34
5UD5|1|D|U|35
5UD5|1|D|A|36
5UD5|1|D|A|37
5UD5|1|D|A|38
5UD5|1|D|U|39

Current chains

Chain D

RNA (70-MER)

Nearby chains