HL_5UQ7_030

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAGAAGCA

Length

8 nucleotides

Bulged bases

5UQ7|1|A|A|1067, 5UQ7|1|A|G|1068, 5UQ7|1|A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_030 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3784

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5UQ7|1|A|U|1066
5UQ7|1|A|A|1067
5UQ7|1|A|G|1068
5UQ7|1|A|A|1069
5UQ7|1|A|A|1070
5UQ7|1|A|G|1071
5UQ7|1|A|C|1072
5UQ7|1|A|A|1073

Current chains

Chain A

23S rRNA

Nearby chains