HL_5UQ7_064

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

C(2MU)GUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 2MU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_064 not in the Motif Atlas

Homologous match to HL_4WF9_058

Geometric discrepancy: 0.1405

The information below is about HL_4WF9_058

Detailed Annotation

LSU A loop

Broad Annotation

LSU A loop

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

5UQ7|1|A|C|2551
5UQ7|1|A|2MU|2552
5UQ7|1|A|G|2553
5UQ7|1|A|U|2554
5UQ7|1|A|U|2555
5UQ7|1|A|C|2556
5UQ7|1|A|G|2557

Current chains

Chain A

23S rRNA

Nearby chains