HL_5UQ7_079

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5UQ7|1|a|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_079 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1211

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5UQ7|1|a|G|259
5UQ7|1|a|G|260
5UQ7|1|a|U|261
5UQ7|1|a|A|262
5UQ7|1|a|A|263
5UQ7|1|a|U|264
5UQ7|1|a|G|265
5UQ7|1|a|G|266
5UQ7|1|a|C|267

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20