HL_5UQ7_094
3D structure
- PDB id
- 5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAA(M2G)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 5UQ7|1|a|A|968, 5UQ7|1|a|G|971
- QA status
- Modified nucleotides: M2G, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UQ7_094 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.2516
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5UQ7|1|a|G|963
5UQ7|1|a|A|964
5UQ7|1|a|A|965
5UQ7|1|a|M2G|966
5UQ7|1|a|5MC|967
5UQ7|1|a|A|968
5UQ7|1|a|A|969
5UQ7|1|a|C|970
5UQ7|1|a|G|971
5UQ7|1|a|C|972
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
- Chain y
- Transfer RNA; tRNA
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