HL_5UQ7_106

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUACCCG

Length

7 nucleotides

Bulged bases

5UQ7|1|x|C|41

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_106 not in the Motif Atlas

Geometric match to HL_4V9F_005

Geometric discrepancy: 0.1997

The information below is about HL_4V9F_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13184.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5UQ7|1|x|C|36
5UQ7|1|x|U|37
5UQ7|1|x|A|38
5UQ7|1|x|C|39
5UQ7|1|x|C|40
5UQ7|1|x|C|41
5UQ7|1|x|G|42

Current chains

Chain x

messenger RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA

Chain c

30S ribosomal protein S3