HL_5UQ8_002
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGGUAGCGG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UQ8_002 not in the Motif Atlas
- Homologous match to HL_7RQB_002
- Geometric discrepancy: 0.1924
- The information below is about HL_7RQB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96598.1
- Basepair signature
- cWW
- Number of instances in this motif group
- 15
Unit IDs
5UQ8|1|A|C|87
5UQ8|1|A|G|88
5UQ8|1|A|G|89
5UQ8|1|A|U|90
5UQ8|1|A|A|92
5UQ8|1|A|G|93
5UQ8|1|A|C|94|||A
5UQ8|1|A|G|94|||B
5UQ8|1|A|G|95
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L29
- Chain X
- 50S ribosomal protein L23
- Chain Y
- 50S ribosomal protein L24
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