5UQ8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5UQ8_001 | 1/A/59:68 | No text annotation | homologous HL_7RQB_001 NA | |
| HL_5UQ8_002 | 1/A/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5UQ8_003 | 1/A/123:128 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
| HL_5UQ8_004 | 1/A/139A:142B | No text annotation | homologous HL_7RQB_004 NA | |
| HL_5UQ8_006 | 1/A/194:201 | No text annotation | homologous HL_4WF9_006 HL_30068.2 | |
| HL_5UQ8_007 | 1/A/225:230 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
| HL_5UQ8_008 | 1/A/246:252 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
| HL_5UQ8_009 | 1/A/272I:272O | No text annotation | geometric HL_5J7L_018 HL_37344.1 | |
| HL_5UQ8_010 | 1/A/305:312 | No text annotation | homologous HL_7RQB_010 NA | |
| HL_5UQ8_011 | 1/A/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_5UQ8_012 | 1/A/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_5UQ8_112 | 1/A/383:391 | No text annotation | ||
| HL_5UQ8_014 | 1/A/410:417 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5UQ8_015 | 1/A/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_5UQ8_016 | 1/A/487:493 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5UQ8_018 | 1/A/566:575 | No text annotation | homologous HL_7RQB_018 NA | |
| HL_5UQ8_019 | 1/A/612:615 | No text annotation | homologous HL_7RQB_019 NA | |
| HL_5UQ8_020 | 1/A/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_5UQ8_021 | 1/A/641:647 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5UQ8_023 | 1/A/712:719 | No text annotation | homologous HL_7RQB_022 NA | |
| HL_5UQ8_024 | 1/A/744:753 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_5UQ8_025 | 1/A/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_5UQ8_026 | 1/A/826:831 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_5UQ8_027 | 1/A/884:892 | No text annotation | homologous HL_7RQB_026 NA | |
| HL_5UQ8_028 | 1/A/955:962 | GNRA | homologous HL_7RQB_027 NA | |
| HL_5UQ8_029 | 1/A/978:985 | No text annotation | homologous HL_7RQB_028 NA | |
| HL_5UQ8_030 | 1/A/1066:1073 | No text annotation | ||
| HL_5UQ8_031 | 1/A/1092:1099 | No text annotation | ||
| HL_5UQ8_032 | 1/A/1222:1227 | GNRA | homologous HL_7RQB_032 NA | |
| HL_5UQ8_033 | 1/A/1281:1289 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_5UQ8_034 | 1/A/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_57176.2 | |
| HL_5UQ8_035 | 1/A/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_5UQ8_036 | 1/A/1389:1398 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_5UQ8_037 | 1/A/1451:1459 | No text annotation | geometric HL_7RQB_037 NA | |
| HL_5UQ8_038 | 1/A/1492:1498 | No text annotation | homologous HL_7RQB_038 NA | |
| HL_5UQ8_040 | 1/A/1565:1568 | Mini UNCG | homologous HL_7A0S_039 HL_48778.2 | |
| HL_5UQ8_041 | 1/A/1612:1619 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
| HL_5UQ8_042 | 1/A/1631A:1635 | No text annotation | homologous HL_7RQB_041 NA | |
| HL_5UQ8_043 | 1/A/1691:1696 | UNCG | geometric HL_4WF9_040 HL_34617.5 | |
| HL_5UQ8_044 | 1/A/1720:1742 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_5UQ8_045 | 1/A/1752:1756 | No text annotation | homologous HL_4WF9_042 HL_80709.3 | |
| HL_5UQ8_046 | 1/A/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_5UQ8_047 | 1/A/1806:1811 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5UQ8_048 | 1/A/1864:1878 | GNRA | homologous HL_7RQB_047 NA | |
| HL_5UQ8_113 | 1/A/1910:1920 | No text annotation | homologous HL_5J7L_181 HL_25847.2 | |
| HL_5UQ8_050 | 1/A/1949:1957 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_5UQ8_051 | 1/A/2027:2036 | No text annotation | homologous HL_7RQB_050 NA | |
| HL_5UQ8_052 | 1/A/2143:2148 | Mini UNCG | geometric HL_5AH5_007 HL_48778.2 | |
| HL_5UQ8_053 | 1/A/2205:2219 | No text annotation | homologous HL_7RQB_052 NA | |
| HL_5UQ8_054 | 1/A/2248:2256 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
| HL_5UQ8_055 | 1/A/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5UQ8_116 | 1/A/2304:2312 | No text annotation | homologous HL_9DFE_198 HL_50860.2 | |
| HL_5UQ8_057 | 1/A/2324:2331 | Pseudoknot geometry | homologous HL_7RQB_056 NA | |
| HL_5UQ8_058 | 1/A/2355:2362 | No text annotation | homologous HL_7RQB_057 NA | |
| HL_5UQ8_059 | 1/A/2374:2379 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5UQ8_060 | 1/A/2404:2413 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_5UQ8_061 | 1/A/2471:2479 | No text annotation | homologous HL_7RQB_060 NA | |
| HL_5UQ8_062 | 1/A/2528:2535 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_5UQ8_063 | 1/A/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_30068.2 | |
| HL_5UQ8_064 | 1/A/2594:2599 | GNRA | homologous HL_7RQB_063 NA | |
| HL_5UQ8_065 | 1/A/2658:2663 | GNRA | geometric HL_4V9F_066 HL_37824.7 | |
| HL_5UQ8_066 | 1/A/2701:2706 | No text annotation | homologous HL_7RQB_065 NA | |
| HL_5UQ8_067 | 1/A/2745:2759 | No text annotation | homologous HL_7RQB_066 NA | |
| HL_5UQ8_069 | 1/A/2819:2827 | No text annotation | homologous HL_7A0S_067 HL_64690.6 | |
| HL_5UQ8_070 | 1/A/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_5UQ8_114 | 1/B/34:48 | No text annotation | homologous HL_9DFE_067 HL_97756.2 | |
| HL_5UQ8_071 | 1/B/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_5UQ8_072 | 1/B/86:91 | GNRA | homologous HL_4V9F_072 HL_37824.7 | |
| HL_5UQ8_073 | 1/a/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_5UQ8_075 | 1/a/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_5UQ8_076 | 1/a/189D:189I | No text annotation | homologous HL_4LFB_004 HL_48417.5 | |
| HL_5UQ8_077 | 1/a/201:216 | Mini UNCG | homologous HL_4LFB_005 HL_48778.2 | |
| HL_5UQ8_078 | 1/a/259:267 | GNRA related | homologous HL_4LFB_006 HL_84299.4 | |
| HL_5UQ8_079 | 1/a/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_5UQ8_080 | 1/a/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_5UQ8_081 | 1/a/342:347 | UNCG | homologous HL_6CZR_080 NA | |
| HL_5UQ8_082 | 1/a/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_5UQ8_083 | 1/a/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_5UQ8_084 | 1/a/458:473 | GNRA | homologous HL_4LFB_012 HL_37824.7 | |
| HL_5UQ8_115 | 1/a/522:527 | GNRA variation | homologous HL_4LFB_033 HL_37824.7 | |
| HL_5UQ8_086 | 1/a/617:623 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_5UQ8_087 | 1/a/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_5UQ8_088 | 1/a/726:731 | GNRA | homologous HL_4LFB_016 HL_37824.7 | |
| HL_5UQ8_089 | 1/a/786:796 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_5UQ8_090 | 1/a/838:848 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_5UQ8_091 | 1/a/862:867 | GNRA | homologous HL_4LFB_019 HL_37824.7 | |
| HL_5UQ8_092 | 1/a/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_5UQ8_093 | 1/a/963:972 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_5UQ8_094 | 1/a/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_5UQ8_095 | 1/a/1029:1032 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_5UQ8_096 | 1/a/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_5UQ8_097 | 1/a/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_5UQ8_098 | 1/a/1134:1140 | No text annotation | homologous HL_6CZR_097 NA | |
| HL_5UQ8_099 | 1/a/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_5UQ8_100 | 1/a/1265:1270 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_5UQ8_101 | 1/a/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_5UQ8_102 | 1/a/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_5UQ8_103 | 1/a/1445:1457 | No text annotation | homologous HL_6CZR_102 NA | |
| HL_5UQ8_104 | 1/a/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_5UQ8_105 | 1/x/36:42 | No text annotation | ||
| HL_5UQ8_106 | 1/y/13:22 | tRNA D-loop | homologous HL_5B63_003 HL_20811.4 | |
| HL_5UQ8_107 | 1/y/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_06059.6 | |
| HL_5UQ8_108 | 1/y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4V9Q_215 HL_28252.8 | |
| HL_5UQ8_109 | 1/z/13:22 | tRNA D-loop | homologous HL_6JXM_001 HL_20811.4 | |
| HL_5UQ8_110 | 1/z/30:40 | No text annotation | homologous HL_5E81_206 NA | |
| HL_5UQ8_111 | 1/z/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4QEI_003 HL_28252.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5UQ8_005 | No text annotation | ||
| HL_5UQ8_013 | No text annotation | ||
| HL_5UQ8_017 | No text annotation | ||
| HL_5UQ8_022 | No text annotation | ||
| HL_5UQ8_039 | Externally structured | ||
| HL_5UQ8_049 | No text annotation | ||
| HL_5UQ8_056 | No text annotation | ||
| HL_5UQ8_068 | No text annotation | ||
| HL_5UQ8_074 | Externally structured | ||
| HL_5UQ8_085 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5UQ8_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW | geometric IL_4WF9_001 IL_04021.2 | |
| IL_5UQ8_002 | 1/A/36:37, 1/A/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5UQ8_003 | 1/A/42:43, 1/A/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.3 | |
| IL_5UQ8_004 | 1/A/81:85, 1/A/97:105 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5UQ8_005 | 1/A/183:184, 1/A/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_5UQ8_006 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7RQB_006 NA | |
| IL_5UQ8_007 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_5UQ8_008 | 1/A/273E:273F, 1/A/363F:364 | Major groove platform | homologous IL_7RQB_009 NA | |
| IL_5UQ8_009 | 1/A/273K:280, 1/A/360:363A | No text annotation | ||
| IL_5UQ8_010 | 1/A/280:284, 1/A/357:360 | tSH-tHW | homologous IL_7RQB_011 NA | |
| IL_5UQ8_011 | 1/A/288:290, 1/A/350:353 | Isolated tHS basepair with bulges | homologous IL_7RQB_012 NA | |
| IL_5UQ8_012 | 1/A/293:295, 1/A/343:347 | No text annotation | homologous IL_7RQB_013 NA | |
| IL_5UQ8_013 | 1/A/481:484, 1/A/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_5UQ8_014 | 1/A/564:566, 1/A/575:577 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_07785.1 | |
| IL_5UQ8_015 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_5UQ8_016 | 1/A/672:674, 1/A/806:808 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
| IL_5UQ8_017 | 1/A/674:678, 1/A/799:806 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_5UQ8_018 | 1/A/697:698, 1/A/763:765 | Single bulged A | geometric IL_7RQB_019 NA | |
| IL_5UQ8_019 | 1/A/702:703, 1/A/728:730 | Single bulged G | geometric IL_4WF9_023 IL_00225.13 | |
| IL_5UQ8_020 | 1/A/703:707, 1/A/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_5UQ8_021 | 1/A/738:741, 1/A/756:758 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
| IL_5UQ8_022 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases | homologous IL_7A0S_021 IL_06549.2 | |
| IL_5UQ8_023 | 1/A/837:838, 1/A/940:942 | Single stack bend | homologous IL_7A0S_022 IL_90729.1 | |
| IL_5UQ8_024 | 1/A/844:846, 1/A/931:934 | Intercalated cWW | homologous IL_7RQB_025 NA | |
| IL_5UQ8_184 | 1/A/844:850, 1/A/927:934 | No text annotation | homologous IL_9DFE_024 IL_68243.1 | |
| IL_5UQ8_025 | 1/A/846:850, 1/A/927:931 | No text annotation | geometric IL_7RQB_026 NA | |
| IL_5UQ8_026 | 1/A/858:862, 1/A/915:919 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_7RQB_027 NA | |
| IL_5UQ8_027 | 1/A/862:863, 1/A/913:915 | Minor groove platform | geometric IL_7A0S_028 IL_51454.3 | |
| IL_5UQ8_028 | 1/A/864:868, 1/A/909:912 | C-loop with bulged stacked A's | homologous IL_7RQB_029 NA | |
| IL_5UQ8_030 | 1/A/875:877, 1/A/899:902 | Minor groove platform with extra cWW | geometric IL_7RQB_031 NA | |
| IL_5UQ8_031 | 1/A/877:879, 1/A/898:899 | Minor groove platform | homologous IL_7RQB_032 NA | |
| IL_5UQ8_032 | 1/A/880:881, 1/A/895:897 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_5UQ8_033 | 1/A/952:954, 1/A/963:965 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
| IL_5UQ8_034 | 1/A/994:996, 1/A/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_5UQ8_035 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
| IL_5UQ8_036 | 1/A/1004:1011, 1/A/1150:1151 | Multiple bulged bases | geometric IL_1R3E_002 IL_84476.1 | |
| IL_5UQ8_037 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U | homologous IL_5J7L_279 IL_89505.4 | |
| IL_5UQ8_038 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation | geometric IL_7RQB_039 NA | |
| IL_5UQ8_039 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation | geometric IL_7RQB_040 NA | |
| IL_5UQ8_040 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5UQ8_041 | 1/A/1043:1051, 1/A/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_5UQ8_043 | 1/A/1064:1066, 1/A/1073:1074 | No text annotation | ||
| IL_5UQ8_044 | 1/A/1087:1091, 1/A/1100:1102 | No text annotation | homologous IL_9DFE_043 NA | |
| IL_5UQ8_045 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair | homologous IL_7A0S_041 IL_42997.3 | |
| IL_5UQ8_046 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation | homologous IL_7RQB_046 NA | |
| IL_5UQ8_047 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5UQ8_048 | 1/A/1219:1221A, 1/A/1229:1230 | Single bulged A | homologous IL_7RQB_048 NA | |
| IL_5UQ8_049 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
| IL_5UQ8_050 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_5UQ8_051 | 1/A/1319:1323, 1/A/1331:1333 | C-loop | homologous IL_7RQB_051 NA | |
| IL_5UQ8_052 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN | homologous IL_7RQB_052 NA | |
| IL_5UQ8_053 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS | homologous IL_7RQB_053 NA | |
| IL_5UQ8_054 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation | homologous IL_7RQB_054 NA | |
| IL_5UQ8_055 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN | homologous IL_7RQB_055 NA | |
| IL_5UQ8_056 | 1/A/1433:1435, 1/A/1557:1560 | Isolated tWW turn | homologous IL_7RQB_056 NA | |
| IL_5UQ8_057 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5UQ8_058 | 1/A/1448:1450A, 1/A/1462:1463 | Single stack bend | homologous IL_7RQB_058 NA | |
| IL_5UQ8_059 | 1/A/1450B:1451, 1/A/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_5UQ8_060 | 1/A/1469:1473, 1/A/1518:1523 | UAA/GAN | homologous IL_7RQB_060 NA | |
| IL_5UQ8_061 | 1/A/1481:1482, 1/A/1506:1510 | No text annotation | homologous IL_7RQB_061 NA | |
| IL_5UQ8_062 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A | homologous IL_7RQB_062 NA | |
| IL_5UQ8_063 | 1/A/1526:1529, 1/A/1540:1546 | No text annotation | homologous IL_7RQB_063 NA | |
| IL_5UQ8_064 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_5UQ8_065 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn | homologous IL_7RQB_065 NA | |
| IL_5UQ8_066 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_5UQ8_187 | 1/A/1666:1674, 1/A/1990:1994 | No text annotation | homologous IL_9DFE_066 IL_22854.4 | |
| IL_5UQ8_067 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH | geometric IL_7A0S_062 IL_76758.2 | |
| IL_5UQ8_068 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5UQ8_069 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_5UQ8_070 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5UQ8_071 | 1/A/1837:1840, 1/A/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_5UQ8_072 | 1/A/1841:1842, 1/A/1898:1901 | Major groove intercalation | homologous IL_7RQB_072 NA | |
| IL_5UQ8_073 | 1/A/1846:1849, 1/A/1893:1894 | Minor groove platform | homologous IL_7RQB_073 NA | |
| IL_5UQ8_074 | 1/A/1851:1855, 1/A/1887:1891 | UAA/GAN with extra pair | homologous IL_7RQB_074 NA | |
| IL_5UQ8_075 | 1/A/1856:1860, 1/A/1882:1886 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5UQ8_076 | 1/A/1933:1934, 1/A/1964:1967 | Bulged stacked bases | geometric IL_5J7L_318 IL_22551.4 | |
| IL_5UQ8_077 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation | homologous IL_7RQB_077 NA | |
| IL_5UQ8_078 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_5UQ8_079 | 1/A/2054:2057, 1/A/2611:2615 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
| IL_5UQ8_080 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5UQ8_081 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.3 | |
| IL_5UQ8_082 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5UQ8_083 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation | homologous IL_7RQB_083 NA | |
| IL_5UQ8_085 | 1/A/2108:2110, 1/A/2179:2181 | Isolated non-canonical cWW pair | geometric IL_5AY2_001 IL_87907.2 | |
| IL_5UQ8_086 | 1/A/2110:2120, 1/A/2178:2179 | No text annotation | homologous IL_7RQB_085 NA | |
| IL_5UQ8_087 | 1/A/2124:2127, 1/A/2161:2174 | No text annotation | homologous IL_7RQB_086 NA | |
| IL_5UQ8_088 | 1/A/2129:2136, 1/A/2155:2159 | No text annotation | homologous IL_7RQB_087 NA | |
| IL_5UQ8_089 | 1/A/2297:2299, 1/A/2317:2321 | Isolated tHS basepair with bulges | geometric IL_7RQB_088 NA | |
| IL_5UQ8_090 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared | homologous IL_7RQB_089 NA | |
| IL_5UQ8_091 | 1/A/2401:2403, 1/A/2414:2415 | Major groove platform | homologous IL_7RQB_090 NA | |
| IL_5UQ8_092 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_5UQ8_093 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_5UQ8_094 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform | geometric IL_3OXE_003 IL_48076.6 | |
| IL_5UQ8_095 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_5UQ8_096 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared | homologous IL_7RQB_095 NA | |
| IL_5UQ8_097 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
| IL_5UQ8_098 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_7A0S_089 IL_07785.1 | |
| IL_5UQ8_099 | 1/A/2512:2513, 1/A/2571:2574 | Multiple bulged bases | homologous IL_7A0S_090 IL_42626.2 | |
| IL_5UQ8_100 | 1/A/2522:2523, 1/A/2540:2543 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_02555.1 | |
| IL_5UQ8_102 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A | geometric IL_4V9F_090 IL_42771.1 | |
| IL_5UQ8_103 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5UQ8_104 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_5UQ8_105 | 1/A/2680:2684, 1/A/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5UQ8_106 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5UQ8_107 | 1/A/2695:2696, 1/A/2711:2714 | No text annotation | homologous IL_8VTW_105 NA | |
| IL_5UQ8_108 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_49767.8 | |
| IL_5UQ8_109 | 1/A/2838:2839, 1/A/2878:2880 | Single bulged C | homologous IL_7RQB_108 NA | |
| IL_5UQ8_110 | 1/A/2843:2846, 1/A/2870:2874 | No text annotation | homologous IL_7RQB_109 NA | |
| IL_5UQ8_111 | 1/A/2847:2852, 1/A/2865:2869 | tHS double platform | homologous IL_7RQB_110 NA | |
| IL_5UQ8_112 | 1/B/17:18, 1/B/65:67 | Major groove intercalation | homologous IL_4WF9_112 IL_31462.6 | |
| IL_5UQ8_113 | 1/B/23:28, 1/B/56:60 | No text annotation | homologous IL_7RQB_112 NA | |
| IL_5UQ8_114 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_5UQ8_115 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_5UQ8_116 | 1/B/71:79, 1/B/98:106 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5UQ8_117 | 1/a/30:32, 1/a/552:553 | Single bulged G | homologous IL_5J7L_001 IL_00225.13 | |
| IL_5UQ8_118 | 1/a/44:45, 1/a/396:398 | Single bulged A | homologous IL_4LFB_002 IL_31462.6 | |
| IL_5UQ8_119 | 1/a/47:52, 1/a/359:361 | No text annotation | homologous IL_4LFB_003 IL_14177.2 | |
| IL_5UQ8_120 | 1/a/54:56, 1/a/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_5UQ8_188 | 1/a/63:77, 1/a/92:104 | No text annotation | ||
| IL_5UQ8_122 | 1/a/129A:131, 1/a/231:232 | Minor groove platform | homologous IL_6CZR_119 NA | |
| IL_5UQ8_123 | 1/a/132:136, 1/a/227:230 | No text annotation | homologous IL_4LFB_008 IL_64231.5 | |
| IL_5UQ8_124 | 1/a/148:153, 1/a/168:174 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_5UQ8_125 | 1/a/186:188, 1/a/189M:191 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_5UQ8_126 | 1/a/242:247, 1/a/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_5UQ8_127 | 1/a/249:252, 1/a/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_5UQ8_128 | 1/a/292:293, 1/a/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_5UQ8_129 | 1/a/367:369, 1/a/392:393 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_5UQ8_130 | 1/a/371:375, 1/a/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_5UQ8_131 | 1/a/375:376, 1/a/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_5UQ8_132 | 1/a/409:416, 1/a/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_5UQ8_133 | 1/a/446:450, 1/a/483:488 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_4LFB_018 IL_88269.4 | |
| IL_5UQ8_134 | 1/a/450:455, 1/a/476:483 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_5UQ8_135 | 1/a/504:511, 1/a/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_5UQ8_136 | 1/a/515:521, 1/a/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5UQ8_137 | 1/a/569:575, 1/a/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_5UQ8_138 | 1/a/580:584, 1/a/757:761 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_5UQ8_139 | 1/a/594:596, 1/a/644:645 | Major groove platform | homologous IL_4LFB_024 IL_48076.6 | |
| IL_5UQ8_140 | 1/a/597:598, 1/a/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_5UQ8_141 | 1/a/605:612, 1/a/628:633 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_5UQ8_142 | 1/a/654:655, 1/a/751:754 | Major groove platform; stack outside cWW | geometric IL_1KUQ_001 IL_50694.7 | |
| IL_5UQ8_143 | 1/a/657:658, 1/a/747:749 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_5UQ8_144 | 1/a/662:666, 1/a/740:743 | Tandem non-canonical cWW pairs | homologous IL_4LFB_029 IL_85033.2 | |
| IL_5UQ8_190 | 1/a/673:677, 1/a/713:717 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_49751.4 | |
| IL_5UQ8_146 | 1/a/683:688, 1/a/699:707 | No text annotation | homologous IL_6CZR_143 NA | |
| IL_5UQ8_147 | 1/a/774:778, 1/a/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_5UQ8_148 | 1/a/779:783, 1/a/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_5UQ8_149 | 1/a/887:894, 1/a/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_41756.4 | |
| IL_5UQ8_150 | 1/a/922:923, 1/a/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.6 | |
| IL_5UQ8_151 | 1/a/925:927, 1/a/1390:1391 | Single bulged G | homologous IL_4LFB_036 IL_00225.13 | |
| IL_5UQ8_152 | 1/a/933:935, 1/a/1380:1384 | Minor groove platform | homologous IL_4LFB_037 IL_47078.3 | |
| IL_5UQ8_153 | 1/a/953:954, 1/a/1226:1228 | Minor groove platform | homologous IL_4LFB_038 IL_51454.3 | |
| IL_5UQ8_154 | 1/a/993:997, 1/a/1044:1045 | Minor groove platform | geometric IL_6CZR_151 NA | |
| IL_5UQ8_155 | 1/a/1025:1028, 1/a/1033:1036 | No text annotation | ||
| IL_5UQ8_156 | 1/a/1048:1050, 1/a/1208:1209 | Single bulged U | homologous IL_4LFB_042 IL_89505.4 | |
| IL_5UQ8_158 | 1/a/1052:1056, 1/a/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_5UQ8_159 | 1/a/1057:1058, 1/a/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_5UQ8_160 | 1/a/1060:1061, 1/a/1195:1197 | Single bulged U | geometric IL_4LFB_046 IL_89505.4 | |
| IL_5UQ8_161 | 1/a/1061:1063, 1/a/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_5UQ8_162 | 1/a/1124:1127, 1/a/1145:1149 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_5UQ8_163 | 1/a/1129:1132, 1/a/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_5UQ8_164 | 1/a/1158:1161, 1/a/1175:1181 | No text annotation | geometric IL_5J7L_053 IL_42032.1 | |
| IL_5UQ8_165 | 1/a/1247:1253, 1/a/1284:1290 | No text annotation | homologous IL_4LFB_051 IL_09129.2 | |
| IL_5UQ8_166 | 1/a/1255:1258, 1/a/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_5UQ8_167 | 1/a/1259:1262, 1/a/1273:1276 | Double sheared | geometric IL_5J7L_256 IL_09705.15 | |
| IL_5UQ8_168 | 1/a/1303:1308, 1/a/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_85536.2 | |
| IL_5UQ8_169 | 1/a/1399:1401, 1/a/1501:1504 | No text annotation | homologous IL_6CZR_165 NA | |
| IL_5UQ8_191 | 1/a/1401:1404, 1/a/1497:1501 | No text annotation | homologous IL_4LFB_068 IL_65718.4 | |
| IL_5UQ8_192 | 1/a/1405:1407, 1/a/1494:1496 | Isolated non-canonical cWW pair | homologous IL_4LFB_069 IL_87907.2 | |
| IL_5UQ8_193 | 1/a/1407:1409, 1/a/1491:1494 | No text annotation | homologous IL_5J7L_364 IL_90351.1 | |
| IL_5UQ8_172 | 1/a/1412:1414, 1/a/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_5UQ8_173 | 1/a/1416:1419, 1/a/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_5UQ8_174 | 1/a/1431:1435, 1/a/1466:1469 | UAA/GAN variation | homologous IL_4LFB_062 IL_77691.5 | |
| IL_5UQ8_175 | 1/a/1435:1437, 1/a/1464:1466 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_87907.2 | |
| IL_5UQ8_176 | 1/a/1440:1443, 1/a/1459:1461 | Isolated basepair with bulged bases | homologous IL_6CZR_172 NA | |
| IL_5UQ8_177 | 1/a/1534:1537, 1/x/6:9 | Tandem non-canonical cWW pairs | geometric IL_413D_001 IL_13404.2 | |
| IL_5UQ8_178 | 1/a/1539:1541, 1/x/3:4 | No text annotation | ||
| IL_5UQ8_179 | 1/x/30:32, 1/x/47:49 | Isolated non-canonical cWW pair | geometric IL_4V9F_023 IL_87907.2 | |
| IL_5UQ8_181 | 1/z/27:29, 1/z/42:43 | No text annotation | ||
| IL_5UQ8_182 | 1/z/29:30, 1/z/40:42 | Single stack bend | geometric IL_8P9A_298 IL_90729.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5UQ8_183 | No text annotation | ||
| IL_5UQ8_029 | Isolated cWS basepair | ||
| IL_5UQ8_185 | No text annotation | ||
| IL_5UQ8_042 | No text annotation | ||
| IL_5UQ8_186 | No text annotation | ||
| IL_5UQ8_084 | Isolated non-canonical cWW pair | ||
| IL_5UQ8_101 | No text annotation | ||
| IL_5UQ8_121 | No text annotation | ||
| IL_5UQ8_189 | No text annotation | ||
| IL_5UQ8_145 | No text annotation | ||
| IL_5UQ8_157 | Isolated non-canonical cWW pair | ||
| IL_5UQ8_170 | No text annotation | ||
| IL_5UQ8_171 | No text annotation | ||
| IL_5UQ8_180 | Stack and bulge |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5UQ8_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_5UQ8_030 | 1/A/30:31, 1/A/474:484, 1/A/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_5UQ8_031 | 1/A/32:35, 1/A/445:461, 1/A/468:473 | No text annotation | homologous J3_9DFE_003 J3_30040.2 | |
| J3_5UQ8_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation | homologous J3_7RQB_002 NA | |
| J3_5UQ8_003 | 1/A/269:272B, 1/A/272V:273C, 1/A/366:370 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5UQ8_004 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_5UQ8_005 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5UQ8_006 | 1/A/1055:1057, 1/A/1081:1087, 1/A/1102:1104 | No text annotation | ||
| J3_5UQ8_007 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_5UQ8_008 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation | homologous J3_7RQB_008 NA | |
| J3_5UQ8_009 | 1/A/1344:1350, 1/A/1381:1385, 1/A/1402:1403 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5UQ8_032 | 1/A/1424:1429, 1/A/1564:1565, 1/A/1568:1574 | No text annotation | homologous J3_9DFE_013 J3_34864.2 | |
| J3_5UQ8_010 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation | homologous J3_7A0S_009 J3_89368.5 | |
| J3_5UQ8_011 | 1/A/2282:2284, 1/A/2384:2395, 1/A/2421:2427 | No text annotation | homologous J3_9DFE_015 J3_20992.1 | |
| J3_5UQ8_012 | 1/A/2295:2297, 1/A/2321:2323, 1/A/2332:2337 | No text annotation | homologous J3_7RQB_011 NA | |
| J3_5UQ8_013 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5UQ8_015 | 1/A/2814:2815, 1/A/2831:2836, 1/A/2882:2886 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_5UQ8_016 | 1/B/11:16, 1/B/68:69, 1/B/108:110 | No text annotation | homologous J3_7RQB_015 NA | |
| J3_5UQ8_017 | 1/a/46:47, 1/a/361:367, 1/a/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_5UQ8_033 | 1/a/46:52, 1/a/359:367, 1/a/393:395 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_5UQ8_018 | 1/a/586:588, 1/a/651:654, 1/a/754:755 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_5UQ8_034 | 1/a/586:588, 1/a/651:655, 1/a/751:755 | No text annotation | homologous J3_4LFB_015 J3_17385.4 | |
| J3_5UQ8_019 | 1/a/672:673, 1/a/717:725, 1/a/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_5UQ8_020 | 1/a/826:829, 1/a/857:861, 1/a/868:874 | No text annotation | homologous J3_4LFB_001 J3_85054.4 | |
| J3_5UQ8_021 | 1/a/936:939, 1/a/1344:1350, 1/a/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_5UQ8_022 | 1/a/943:946, 1/a/1235:1237, 1/a/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_5UQ8_023 | 1/a/955:962, 1/a/973:984, 1/a/1221:1225 | No text annotation | homologous J3_4LFB_004 J3_83516.4 | |
| J3_5UQ8_024 | 1/a/990:993, 1/a/1045:1047, 1/a/1210:1215 | No text annotation | homologous J3_6CZR_021 NA | |
| J3_5UQ8_035 | 1/a/990:997, 1/a/1044:1047, 1/a/1210:1215 | No text annotation | homologous J3_6CZR_063 NA | |
| J3_5UQ8_025 | 1/a/1002:1006, 1/a/1023:1025, 1/a/1036:1038 | No text annotation | ||
| J3_5UQ8_036 | 1/a/1002:1006, 1/a/1023:1028, 1/a/1033:1038 | No text annotation | homologous J3_6CZR_022 NA | |
| J3_5UQ8_026 | 1/a/1063:1068, 1/a/1107:1113, 1/a/1187:1193 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_5UQ8_037 | 1/a/1073:1074, 1/a/1083:1086, 1/a/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_79369.1 | |
| J3_5UQ8_028 | 1/a/1116:1118, 1/a/1155:1158, 1/a/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_5UQ8_038 | 1/a/1116:1118, 1/a/1155:1161, 1/a/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_5UQ8_029 | 1/a/1237:1241, 1/a/1296:1303, 1/a/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J4_5UQ8_001 | 1/A/268:269, 1/A/370:375, 1/A/399:406, 1/A/421:424 | No text annotation | homologous J4_9DFE_001 J4_45801.6 | |
| J4_5UQ8_002 | 1/A/297:301, 1/A/316:319, 1/A/323:325, 1/A/337:341 | No text annotation | homologous J4_9DFE_002 J4_71729.5 | |
| J4_5UQ8_003 | 1/A/1270:1276, 1/A/1294:1295, 1/A/1645:1648, 1/A/2009:2010 | No text annotation | homologous J4_9DFE_003 J4_64571.5 | |
| J4_5UQ8_004 | 1/A/1310:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1604 | No text annotation | homologous J4_9DFE_004 J4_69051.6 | |
| J4_5UQ8_005 | 1/A/1313:1314, 1/A/1338:1343, 1/A/1404:1405, 1/A/1597:1603 | No text annotation | homologous J4_9DFE_005 J4_10313.5 | |
| J4_5UQ8_006 | 1/A/1444:1445, 1/A/1466:1467, 1/A/1525:1526, 1/A/1546:1547 | No text annotation | homologous J4_9DFE_006 J4_24280.2 | |
| J4_5UQ8_007 | 1/A/1772:1776, 1/A/1788:1792, 1/A/1827:1830, 1/A/1975:1979 | No text annotation | homologous J4_9DFE_007 J4_61477.5 | |
| J4_5UQ8_008 | 1/A/1833:1835, 1/A/1905:1906, 1/A/1924:1933, 1/A/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_93343.1 | |
| J4_5UQ8_009 | 1/A/2285:2289, 1/A/2343:2347, 1/A/2370:2372, 1/A/2381:2383 | No text annotation | homologous J4_9DFE_009 J4_04930.6 | |
| J4_5UQ8_010 | 1/A/2643:2646, 1/A/2674:2676, 1/A/2731:2735, 1/A/2769:2771 | No text annotation | homologous J4_9DFE_010 J4_77044.4 | |
| J4_5UQ8_011 | 1/a/115:122, 1/a/239:240, 1/a/286:289, 1/a/311:312 | No text annotation | homologous J4_4LFB_001 J4_35578.3 | |
| J4_5UQ8_012 | 1/a/142:144, 1/a/178:183, 1/a/194:198, 1/a/219:221 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_5UQ8_013 | 1/a/575:577, 1/a/764:769, 1/a/810:821, 1/a/879:880 | No text annotation | homologous J4_4LFB_003 J4_61885.6 | |
| J4_5UQ8_014 | 1/y/7:10, 1/y/25:27, 1/y/43:49, 1/y/65:66 | tRNA junction | homologous J4_4TUE_004 J4_70449.28 | |
| J4_5UQ8_015 | 1/z/7:10, 1/z/25:27, 1/z/43:49, 1/z/65:66 | No text annotation | homologous J4_6UGG_002 J4_70449.28 | |
| J5_5UQ8_001 | 1/A/47:54, 1/A/116:121, 1/A/130:131, 1/A/148:150, 1/A/176:178 | No text annotation | homologous J5_9DFE_001 J5_01737.2 | |
| J5_5UQ8_002 | 1/A/268:272, 1/A/272:273, 1/A/366:375, 1/A/399:406, 1/A/421:424 | No text annotation | ||
| J5_5UQ8_003 | 1/A/531:533, 1/A/560:564, 1/A/577:579, 1/A/1261:1262, 1/A/2017:2018 | No text annotation | homologous J5_9DFE_003 J5_43153.5 | |
| J5_5UQ8_004 | 1/A/584:589, 1/A/668:671, 1/A/809:812, 1/A/1195:1196, 1/A/1250:1256 | No text annotation | homologous J5_9DFE_004 J5_74302.5 | |
| J5_5UQ8_005 | 1/A/601:604, 1/A/624:628, 1/A/635:638, 1/A/650:652, 1/A/652:656 | No text annotation | ||
| J5_5UQ8_006 | 1/A/1674:1682, 1/A/1706:1707, 1/A/1751:1752, 1/A/1756:1764, 1/A/1988:1990 | No text annotation | homologous J5_9DFE_005 J5_62523.6 | |
| J5_5UQ8_007 | 1/A/2057:2064, 1/A/2446:2453, 1/A/2500:2507, 1/A/2582:2588, 1/A/2606:2611 | No text annotation | ||
| J5_5UQ8_008 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2282, 1/A/2427:2435 | No text annotation | homologous J5_9DFE_007 J5_39529.1 | |
| J5_5UQ8_009 | 1/a/36:39, 1/a/403:406, 1/a/436:442, 1/a/492:500, 1/a/545:548 | No text annotation | homologous J5_4LFB_001 J5_70703.1 | |
| J5_5UQ8_010 | 1/a/58:61, 1/a/106:113, 1/a/314:316, 1/a/337:339, 1/a/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_5UQ8_001 | 1/A/44:45, 1/A/179:183, 1/A/214:224, 1/A/231:235, 1/A/262:266, 1/A/426:433 | No text annotation | ||
| J6_5UQ8_002 | 1/A/2074:2077, 1/A/2243:2246, 1/A/2258:2259, 1/A/2281:2284, 1/A/2384:2395, 1/A/2421:2435 | No text annotation | ||
| J7_5UQ8_001 | 1/A/7:15, 1/A/525:531, 1/A/2018:2023, 1/A/2040:2043, 1/A/2625:2630, 1/A/2788:2789, 1/A/2894:2896 | No text annotation | ||
| J7_5UQ8_002 | 1/A/817:822, 1/A/835:836, 1/A/943:946, 1/A/971:976, 1/A/987:991, 1/A/1163:1164, 1/A/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5UQ8_014 | No text annotation | ||
| J3_5UQ8_027 | No text annotation |
Coloring options: