HL_5UQ8_013

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUCGUGGAGC

Length

11 nucleotides

Bulged bases

5UQ8|1|A|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_013 not in the Motif Atlas

Homologous match to HL_7RQB_013

Geometric discrepancy: 0.1234

The information below is about HL_7RQB_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5UQ8|1|A|G|382
5UQ8|1|A|U|383
5UQ8|1|A|U|384
5UQ8|1|A|C|385
5UQ8|1|A|G|386
5UQ8|1|A|U|387
5UQ8|1|A|G|388
5UQ8|1|A|G|389
5UQ8|1|A|A|390
5UQ8|1|A|G|391
5UQ8|1|A|C|392

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain P

50S ribosomal protein L15