HL_5UQ8_036

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5UQ8|1|A|U|1396, 5UQ8|1|A|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_036 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1329

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5UQ8|1|A|G|1389
5UQ8|1|A|U|1390
5UQ8|1|A|U|1391
5UQ8|1|A|A|1392
5UQ8|1|A|A|1393
5UQ8|1|A|U|1394
5UQ8|1|A|A|1395
5UQ8|1|A|U|1396
5UQ8|1|A|U|1397
5UQ8|1|A|C|1398

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L23