HL_5UQ8_056

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_056 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1662

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5UQ8|1|A|G|2303
5UQ8|1|A|G|2304
5UQ8|1|A|A|2305
5UQ8|1|A|C|2306
5UQ8|1|A|G|2307
5UQ8|1|A|G|2308
5UQ8|1|A|A|2309
5UQ8|1|A|A|2310
5UQ8|1|A|A|2311
5UQ8|1|A|U|2312
5UQ8|1|A|C|2313

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain G

50S ribosomal protein L5