HL_5UQ8_060

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

5UQ8|1|A|U|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_060 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.118

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

5UQ8|1|A|C|2404
5UQ8|1|A|G|2405
5UQ8|1|A|U|2406
5UQ8|1|A|G|2407
5UQ8|1|A|U|2408
5UQ8|1|A|G|2409
5UQ8|1|A|G|2410
5UQ8|1|A|A|2411
5UQ8|1|A|A|2412
5UQ8|1|A|G|2413

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain P

50S ribosomal protein L15