3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAGACCAC
Length
9 nucleotides
Bulged bases
5UQ8|1|A|A|2820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5UQ8_069 not in the Motif Atlas
Homologous match to HL_7A0S_067
Geometric discrepancy: 0.1209
The information below is about HL_7A0S_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.6
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

5UQ8|1|A|G|2819
5UQ8|1|A|A|2820
5UQ8|1|A|A|2821
5UQ8|1|A|G|2822
5UQ8|1|A|A|2823
5UQ8|1|A|C|2824
5UQ8|1|A|C|2825
5UQ8|1|A|A|2826
5UQ8|1|A|C|2827

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L3
Chain R
50S ribosomal protein L17
Chain T
50S ribosomal protein L19

Coloring options:


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