HL_5UQ8_069

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

5UQ8|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_069 not in the Motif Atlas

Homologous match to HL_7A0S_067

Geometric discrepancy: 0.1209

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5UQ8|1|A|G|2819
5UQ8|1|A|A|2820
5UQ8|1|A|A|2821
5UQ8|1|A|G|2822
5UQ8|1|A|A|2823
5UQ8|1|A|C|2824
5UQ8|1|A|C|2825
5UQ8|1|A|A|2826
5UQ8|1|A|C|2827

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain R

50S ribosomal protein L17

Chain T

50S ribosomal protein L19