HL_5UQ8_077

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

5UQ8|1|a|U|202, 5UQ8|1|a|U|204

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_077 not in the Motif Atlas

Homologous match to HL_4LFB_005

Geometric discrepancy: 0.2911

The information below is about HL_4LFB_005

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

5UQ8|1|a|C|201
5UQ8|1|a|U|202
5UQ8|1|a|U|203
5UQ8|1|a|U|204
5UQ8|1|a|G|216

Current chains

Chain a

16S rRNA

Nearby chains