3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUACGG
Length
6 nucleotides
Bulged bases
5UQ8|1|a|A|1447, 5UQ8|1|a|G|1456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5UQ8_103 not in the Motif Atlas
Homologous match to HL_6CZR_102
Geometric discrepancy: 0.479
The information below is about HL_6CZR_102
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_52463.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

5UQ8|1|a|C|1445
5UQ8|1|a|U|1446
5UQ8|1|a|A|1447
5UQ8|1|a|C|1452
5UQ8|1|a|G|1456
5UQ8|1|a|G|1457

Current chains

Chain a
16S rRNA

Nearby chains

Chain t
30S ribosomal protein S20

Coloring options:


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