HL_5UQ8_103

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

5UQ8|1|a|A|1447, 5UQ8|1|a|G|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ8_103 not in the Motif Atlas

Homologous match to HL_6CZR_102

Geometric discrepancy: 0.479

The information below is about HL_6CZR_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52463.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

5UQ8|1|a|C|1445
5UQ8|1|a|U|1446
5UQ8|1|a|A|1447
5UQ8|1|a|C|1452
5UQ8|1|a|G|1456
5UQ8|1|a|G|1457

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20