HL_5UQ8_110
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUUGAAAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UQ8_110 not in the Motif Atlas
- Homologous match to HL_5E81_206
- Geometric discrepancy: 0.3049
- The information below is about HL_5E81_206
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5UQ8|1|z|G|30
5UQ8|1|z|A|31
5UQ8|1|z|U|32
5UQ8|1|z|U|33
5UQ8|1|z|G|34
5UQ8|1|z|A|35
5UQ8|1|z|A|36
5UQ8|1|z|A|37
5UQ8|1|z|A|38
5UQ8|1|z|U|39
5UQ8|1|z|C|40
Current chains
- Chain z
- E-site tRNA Phe
Nearby chains
- Chain G
- 50S ribosomal protein L5
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain g
- 30S ribosomal protein S7
- Chain m
- 30S ribosomal protein S13
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