HL_5UYK_010

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5UYK|1|01|G|329, 5UYK|1|01|A|330, 5UYK|1|01|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_010 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1254

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

5UYK|1|01|G|327
5UYK|1|01|U|328
5UYK|1|01|G|329
5UYK|1|01|A|330
5UYK|1|01|C|331
5UYK|1|01|A|332
5UYK|1|01|G|333
5UYK|1|01|C|334
5UYK|1|01|C|335

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 06

50S ribosomal protein L4

Chain 23

50S ribosomal protein L24