HL_5UYK_024

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

5UYK|1|01|U|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_024 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.373

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5UYK|1|01|U|884
5UYK|1|01|C|885
5UYK|1|01|A|886
5UYK|1|01|U|887
5UYK|1|01|C|888
5UYK|1|01|C|889
5UYK|1|01|C|890
5UYK|1|01|G|891
5UYK|1|01|A|892

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19