HL_5UYK_025

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

5UYK|1|01|U|958, 5UYK|1|01|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_025 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1443

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5UYK|1|01|U|955
5UYK|1|01|G|956
5UYK|1|01|C|957
5UYK|1|01|U|958
5UYK|1|01|A|959
5UYK|1|01|A|960
5UYK|1|01|C|961
5UYK|1|01|G|962

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 02

5S ribosomal RNA; 5S rRNA

Chain 15

50S ribosomal protein L16