HL_5UYK_058

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

5UYK|1|01|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.132

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5UYK|1|01|U|2404
5UYK|1|01|G|2405
5UYK|1|01|A|2406
5UYK|1|01|A|2407
5UYK|1|01|U|2408
5UYK|1|01|G|2409
5UYK|1|01|G|2410
5UYK|1|01|A|2411
5UYK|1|01|A|2412
5UYK|1|01|G|2413

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L15