HL_5UYK_075

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

5UYK|1|A|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_075 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3886

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5UYK|1|A|C|206
5UYK|1|A|C|207
5UYK|1|A|U|208
5UYK|1|A|U|209
5UYK|1|A|C|210
5UYK|1|A|G|211
5UYK|1|A|G|212
5UYK|1|A|G|213

Current chains

Chain A

16S ribosomal RNA

Nearby chains