HL_5UYK_078
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AACUGAGACACGGU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYK_078 not in the Motif Atlas
- Homologous match to HL_5J7L_008
- Geometric discrepancy: 0.1225
- The information below is about HL_5J7L_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81205.3
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5UYK|1|A|A|320
5UYK|1|A|A|321
5UYK|1|A|C|322
5UYK|1|A|U|323
5UYK|1|A|G|324
5UYK|1|A|A|325
5UYK|1|A|G|326
5UYK|1|A|A|327
5UYK|1|A|C|328
5UYK|1|A|A|329
5UYK|1|A|C|330
5UYK|1|A|G|331
5UYK|1|A|G|332
5UYK|1|A|U|333
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
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