HL_5UYK_091

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

5UYK|1|A|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_091 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.345

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5UYK|1|A|G|963
5UYK|1|A|A|964
5UYK|1|A|U|965
5UYK|1|A|G|966
5UYK|1|A|C|967
5UYK|1|A|A|968
5UYK|1|A|A|969
5UYK|1|A|C|970
5UYK|1|A|G|971
5UYK|1|A|C|972

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain W

Transfer RNA; tRNA