HL_5UYK_097

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_097 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1813

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5UYK|1|A|C|1265
5UYK|1|A|G|1266
5UYK|1|A|C|1267
5UYK|1|A|G|1268
5UYK|1|A|A|1269
5UYK|1|A|G|1270

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19