HL_5UYK_106

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

5UYK|1|X|C|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_106 not in the Motif Atlas

Homologous match to HL_6ORD_036

Geometric discrepancy: 0.368

The information below is about HL_6ORD_036

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.2

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

47

Unit IDs

5UYK|1|X|G|31
5UYK|1|X|C|32
5UYK|1|X|U|33
5UYK|1|X|C|34
5UYK|1|X|A|35
5UYK|1|X|U|36
5UYK|1|X|A|37
5UYK|1|X|A|38
5UYK|1|X|C|39

Current chains

Chain X

tRNAfMet

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain G

30S ribosomal protein S7

Chain K

30S ribosomal protein S11

Chain V

mRNA

Chain W

Transfer RNA; tRNA