HL_5UYK_109
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- 5UYK|1|Y|G|34
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYK_109 not in the Motif Atlas
- Homologous match to HL_6ORD_036
- Geometric discrepancy: 0.2914
- The information below is about HL_6ORD_036
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 47
Unit IDs
5UYK|1|Y|A|31
5UYK|1|Y|U|32
5UYK|1|Y|U|33
5UYK|1|Y|G|34
5UYK|1|Y|A|35
5UYK|1|Y|A|36
5UYK|1|Y|A|37
5UYK|1|Y|A|38
5UYK|1|Y|U|39
Current chains
- Chain Y
- tRNAPhe
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain V
- mRNA
- Chain W
- Transfer RNA; tRNA
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