HL_5UYL_010
3D structure
- PDB id
- 5UYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUGACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 5UYL|1|01|G|329, 5UYL|1|01|A|330, 5UYL|1|01|C|331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYL_010 not in the Motif Atlas
- Homologous match to HL_5J7L_144
- Geometric discrepancy: 0.1686
- The information below is about HL_5J7L_144
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
5UYL|1|01|G|327
5UYL|1|01|U|328
5UYL|1|01|G|329
5UYL|1|01|A|330
5UYL|1|01|C|331
5UYL|1|01|A|332
5UYL|1|01|G|333
5UYL|1|01|C|334
5UYL|1|01|C|335
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 06
- 50S ribosomal protein L4
- Chain 23
- 50S ribosomal protein L24
Coloring options: