HL_5UYL_031

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYL_031 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1287

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5UYL|1|01|G|1281
5UYL|1|01|U|1282
5UYL|1|01|G|1283
5UYL|1|01|A|1284
5UYL|1|01|A|1285
5UYL|1|01|A|1286
5UYL|1|01|A|1287
5UYL|1|01|G|1288
5UYL|1|01|C|1289

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L17

Chain 21

50S ribosomal protein L22

Chain 30

50S ribosomal protein L32