HL_5UYL_078

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYL_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.123

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5UYL|1|A|A|320
5UYL|1|A|A|321
5UYL|1|A|C|322
5UYL|1|A|U|323
5UYL|1|A|G|324
5UYL|1|A|A|325
5UYL|1|A|G|326
5UYL|1|A|A|327
5UYL|1|A|C|328
5UYL|1|A|A|329
5UYL|1|A|C|330
5UYL|1|A|G|331
5UYL|1|A|G|332
5UYL|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20