HL_5UYL_098

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYL_098 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.1234

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5UYL|1|A|C|1265
5UYL|1|A|G|1266
5UYL|1|A|C|1267
5UYL|1|A|G|1268
5UYL|1|A|A|1269
5UYL|1|A|G|1270

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain S

30S ribosomal protein S19