HL_5UYM_006

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5UYM|1|01|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0884

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5UYM|1|01|G|194
5UYM|1|01|A|195
5UYM|1|01|A|196
5UYM|1|01|A|197
5UYM|1|01|C|198
5UYM|1|01|A|199
5UYM|1|01|U|200
5UYM|1|01|C|201

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L15

Chain 26

50S ribosomal protein L28

Chain X

Transfer RNA; tRNA