HL_5UYM_014

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5UYM|1|01|C|490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1208

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5UYM|1|01|C|487
5UYM|1|01|G|488
5UYM|1|01|G|489
5UYM|1|01|C|490
5UYM|1|01|G|491
5UYM|1|01|A|492
5UYM|1|01|G|493

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L22