HL_5UYM_028
3D structure
- PDB id
- 5UYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGUAAUAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYM_028 not in the Motif Atlas
- Homologous match to HL_6PRV_002
- Geometric discrepancy: 0.1485
- The information below is about HL_6PRV_002
- Detailed Annotation
- GNRA wlth tandem sheared
- Broad Annotation
- No text annotation
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5UYM|1|01|C|1092
5UYM|1|01|G|1093
5UYM|1|01|U|1094
5UYM|1|01|A|1095
5UYM|1|01|A|1096
5UYM|1|01|U|1097
5UYM|1|01|A|1098
5UYM|1|01|G|1099
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 08
- 50S ribosomal protein L6
- Chain 11
- 50S ribosomal protein L11
- Chain 34
- 50S ribosomal protein L36
- Chain Y
- Transfer RNA; tRNA
Coloring options: