HL_5UYM_053

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5UYM|1|01|A|2268, 5UYM|1|01|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_053 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0983

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5UYM|1|01|C|2264
5UYM|1|01|U|2265
5UYM|1|01|A|2266
5UYM|1|01|A|2267
5UYM|1|01|A|2268
5UYM|1|01|G|2269
5UYM|1|01|A|2270
5UYM|1|01|G|2271
5UYM|1|01|U|2272
5UYM|1|01|A|2273
5UYM|1|01|A|2274
5UYM|1|01|C|2275
5UYM|1|01|G|2276

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L16

Chain 25

50S ribosomal protein L27