HL_5UYM_065

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5UYM|1|01|G|2751, 5UYM|1|01|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_065 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5UYM|1|01|C|2745
5UYM|1|01|U|2746
5UYM|1|01|G|2747
5UYM|1|01|A|2748
5UYM|1|01|A|2749
5UYM|1|01|A|2750
5UYM|1|01|G|2751
5UYM|1|01|C|2752
5UYM|1|01|A|2753
5UYM|1|01|U|2754
5UYM|1|01|C|2755
5UYM|1|01|U|2756
5UYM|1|01|A|2757
5UYM|1|01|A|2758
5UYM|1|01|G|2759

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36