HL_5UYN_034

3D structure

PDB id

5UYN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5UYN|1|01|U|1396, 5UYN|1|01|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYN_034 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1746

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5UYN|1|01|G|1389
5UYN|1|01|U|1390
5UYN|1|01|U|1391
5UYN|1|01|A|1392
5UYN|1|01|A|1393
5UYN|1|01|U|1394
5UYN|1|01|A|1395
5UYN|1|01|U|1396
5UYN|1|01|U|1397
5UYN|1|01|C|1398

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23