RNA 3D Hub //

5UYN Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5UYN_0031/01/123:128No text annotation
homologous
HL_5J7L_136
NA
HL_5UYN_0061/01/194:201No text annotation
homologous
HL_5J7L_139
NA
HL_5UYN_0081/01/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_5UYN_0091/01/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_5UYN_0101/01/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_5UYN_0111/01/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_5UYN_0121/01/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_5UYN_0141/01/487:493GNRA
homologous
HL_5J7L_148
NA
HL_5UYN_0161/01/566:575T-loop with 2 stacked bulged bases
geometric
HL_5J7L_150
NA
HL_5UYN_0181/01/629:634GNRA
homologous
HL_5J7L_152
NA
HL_5UYN_0211/01/744:753No text annotation
homologous
HL_4WF9_023
HL_50204.1
HL_5UYN_0221/01/779:785No text annotation
geometric
HL_7A0S_007
HL_51020.2
HL_5UYN_0231/01/826:831No text annotation
homologous
HL_7RQB_025
NA
HL_5UYN_0261/01/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_5UYN_0311/01/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_5UYN_0321/01/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_5UYN_0331/01/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_5UYN_0341/01/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_5UYN_0361/01/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_5UYN_0381/01/1565:1568Mini UNCG
homologous
HL_7A0S_039
HL_90436.2
HL_5UYN_0391/01/1612:1619No text annotation
homologous
HL_7RQB_040
NA
HL_5UYN_0401/01/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_5UYN_0411/01/1691:1696No text annotation
homologous
HL_7RQB_042
NA
HL_5UYN_0431/01/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_5UYN_0441/01/1777:1787No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_5UYN_0451/01/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_5UYN_0471/01/1910:1920No text annotation
homologous
HL_9DFE_046
HL_82185.1
HL_5UYN_0481/01/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_5UYN_0491/01/2027:2036No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_5UYN_0521/01/2248:2256No text annotation
homologous
HL_7A0S_052
HL_11974.2
HL_5UYN_0531/01/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_5UYN_0541/01/2303:2313No text annotation
homologous
HL_5J7L_188
NA
HL_5UYN_0551/01/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_5UYN_0561/01/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_5UYN_0571/01/2374:2379GNRA
homologous
HL_4WF9_054
HL_34789.2
HL_5UYN_0591/01/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_5UYN_0601/01/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_5UYN_0611/01/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_5UYN_0621/01/2594:2599GNRA
homologous
HL_7A0S_062
HL_34789.2
HL_5UYN_0631/01/2658:2663GNRA
homologous
HL_7A0S_063
HL_34789.2
HL_5UYN_0641/01/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_5UYN_0651/01/2745:2759No text annotation
homologous
HL_4WF9_062
HL_53269.2
HL_5UYN_0671/01/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_5UYN_0681/01/2856:2861GNRA
homologous
HL_7A0S_068
HL_34789.2
HL_5UYN_0691/02/34:48No text annotation
homologous
HL_5J7L_215
NA
HL_5UYN_0701/02/86:90Mini UNCG
homologous
HL_5J7L_204
NA
HL_5UYN_0711/A/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_5UYN_0761/A/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_5UYN_1131/A/296:301GNRA
homologous
HL_4LFB_007
HL_34789.2
HL_5UYN_0781/A/320:333No text annotation
homologous
HL_5J7L_008
NA
HL_5UYN_0831/A/522:527No text annotation
geometric
HL_5J7L_143
NA
HL_5UYN_0841/A/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_86621.1
HL_5UYN_0861/A/726:731GNRA
homologous
HL_5J7L_016
NA
HL_5UYN_0871/A/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_5UYN_0891/A/862:867GNRA
homologous
HL_4LFB_019
HL_34789.2
HL_5UYN_0911/A/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_5UYN_0941/A/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_5UYN_0951/A/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.2
HL_5UYN_0991/A/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_5UYN_1001/A/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_5UYN_1031/W/13:22tRNA D-loop
homologous
HL_1QF6_001
HL_20490.1
HL_5UYN_1041/W/31:39tRNA anticodon loop
homologous
HL_6CFJ_107
HL_81376.2

Problematic loops

#loop idProblemSequence
HL_5UYN_001No text annotation
HL_5UYN_002No text annotation
HL_5UYN_004No text annotation
HL_5UYN_005No text annotation
HL_5UYN_007No text annotation
HL_5UYN_013GNRA
HL_5UYN_015No text annotation
HL_5UYN_017No text annotation
HL_5UYN_019No text annotation
HL_5UYN_020GNRA wlth tandem sheared
HL_5UYN_024No text annotation
HL_5UYN_025GNRA
HL_5UYN_027No text annotation
HL_5UYN_028GNRA wlth tandem sheared
HL_5UYN_029No text annotation
HL_5UYN_030GNRA
HL_5UYN_035No text annotation
HL_5UYN_037UNCG
HL_5UYN_112No text annotation
HL_5UYN_042No text annotation
HL_5UYN_046GNRA variation
HL_5UYN_050No text annotation
HL_5UYN_051No text annotation
HL_5UYN_058No text annotation
HL_5UYN_066UNCG variation
HL_5UYN_072No text annotation
HL_5UYN_073GNRA
HL_5UYN_074GNRA
HL_5UYN_075No text annotation
HL_5UYN_077GNRA with extra cWW
HL_5UYN_079UNCG
HL_5UYN_080GNRA
HL_5UYN_081UNCG
HL_5UYN_082GNRA wlth extra near cWW
HL_5UYN_085No text annotation
HL_5UYN_088Externally structured
HL_5UYN_090GNRA
HL_5UYN_114No text annotation
HL_5UYN_092GNRA
HL_5UYN_093No text annotation
HL_5UYN_096No text annotation
HL_5UYN_097GNRA
HL_5UYN_098GNRA
HL_5UYN_101UNCG
HL_5UYN_102GNRA
HL_5UYN_105T-loop with 2 stacked bulged bases
HL_5UYN_106tRNA D-loop
HL_5UYN_107tRNA anticodon loop
HL_5UYN_108T-loop with 2 stacked bulged bases
HL_5UYN_109No text annotation
HL_5UYN_110tRNA anticodon loop
HL_5UYN_111T-loop with 2 stacked bulged bases

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5UYN_0011/01/24:30,
1/01/510:516		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_5UYN_0041/01/81:85,
1/01/97:105		No text annotation
homologous
IL_5J7L_248
NA
IL_5UYN_0061/01/188:194,
1/01/201:208		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7RQB_006
NA
IL_5UYN_0071/01/239:245,
1/01/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_5UYN_0081/01/269:271,
1/01/366:370		No text annotation
homologous
IL_5J7L_252
NA
IL_5UYN_0111/01/481:484,
1/01/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_5UYN_0121/01/536:539,
1/01/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_5UYN_0131/01/564:566,
1/01/575:577		Isolated non-canonical cWW pair
homologous
IL_5J7L_257
NA
IL_5UYN_0151/01/672:674,
1/01/806:808		Isolated non-canonical cWW pair
geometric
IL_5J7L_259
NA
IL_5UYN_0161/01/674:678,
1/01/799:806		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
NA
IL_5UYN_0171/01/697:698,
1/01/763:765		Single bulged A
geometric
IL_5J7L_261
NA
IL_5UYN_0181/01/702:703,
1/01/728:730		Single bulged G
geometric
IL_4V9F_026
IL_28408.2
IL_5UYN_0191/01/703:707,
1/01/724:728		Triple sheared
homologous
IL_7RQB_021
NA
IL_5UYN_0201/01/738:740,
1/01/757:758		Major groove platform
homologous
IL_4WF9_026
IL_48076.8
IL_5UYN_0211/01/775:777,
1/01/787:791		Multiple bulged bases
geometric
IL_7RQB_023
NA
IL_5UYN_0221/01/844:847,
1/01/933:934		90 degree turn
homologous
IL_5J7L_267
NA
IL_5UYN_1781/01/844:848,
1/01/930:934		No text annotation
homologous
IL_5J7L_399
NA
IL_5UYN_0241/01/850:851,
1/01/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_5UYN_0251/01/856:862,
1/01/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_5UYN_0271/01/864:868,
1/01/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_5UYN_0311/01/994:996,
1/01/1159:1160		Single bulged C
homologous
IL_7RQB_035
NA
IL_5UYN_0321/01/998:1002,
1/01/1153:1157		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_5UYN_0331/01/1004:1011,
1/01/1150:1151		SSU/LSU pseudoknot
homologous
IL_5J7L_278
NA
IL_5UYN_0341/01/1011:1013,
1/01/1149:1150		Single bulged U
geometric
IL_5J7L_279
NA
IL_5UYN_0351/01/1018:1024,
1/01/1140:1144		Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_5UYN_0361/01/1024:1030,
1/01/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_5UYN_0371/01/1031:1034,
1/01/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_5UYN_0421/01/1196:1198,
1/01/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_5UYN_0441/01/1208:1215,
1/01/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_5UYN_0451/01/1262:1269,
1/01/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_5UYN_0461/01/1310:1313,
1/01/1603:1604		Major groove platform; stack outside cWW
homologous
IL_4WF9_049
IL_74641.2
IL_5UYN_0481/01/1351:1355,
1/01/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_5UYN_0491/01/1357:1361,
1/01/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_5UYN_0541/01/1468:1471,
1/01/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_5UYN_1831/01/1474:1478,
1/01/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_5UYN_0591/01/1651:1656,
1/01/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_5UYN_0601/01/1663:1665,
1/01/1995:1997		Isolated tWW turn
homologous
IL_5J7L_305
NA
IL_5UYN_0611/01/1666:1669,
1/01/1993:1994		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_5UYN_1841/01/1666:1674,
1/01/1990:1994		No text annotation
homologous
IL_4WF9_117
IL_80252.1
IL_5UYN_0621/01/1669:1674,
1/01/1990:1993		Intercalated tWH
homologous
IL_4WF9_065
IL_28217.1
IL_5UYN_0631/01/1686:1691,
1/01/1696:1702		tSH-tSH-tHH-tHS
geometric
IL_7RQB_068
NA
IL_5UYN_0671/01/1770:1771,
1/01/1980:1982		Single bulged A
homologous
IL_4WF9_068
IL_14190.2
IL_5UYN_0681/01/1798:1804,
1/01/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_5UYN_0701/01/1841:1842,
1/01/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_5UYN_1861/01/1851:1860,
1/01/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_5UYN_0731/01/1933:1934,
1/01/1964:1967		Bulged stacked bases
geometric
IL_4WF9_076
IL_24886.2
IL_5UYN_0741/01/1934:1945,
1/01/1961:1964		No text annotation
homologous
IL_4WF9_077
IL_84014.1
IL_5UYN_0751/01/2050:2052,
1/01/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_5UYN_0761/01/2054:2056,
1/01/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_5UYN_0771/01/2067:2069,
1/01/2442:2443		Single bulged U
homologous
IL_4WF9_080
IL_97561.2
IL_5UYN_0781/01/2070:2071,
1/01/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_5UYN_0791/01/2081:2083,
1/01/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_5UYN_0801/01/2085:2087,
1/01/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_5UYN_1981/01/2103:2105,
1/01/2184:2186		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
NA
IL_5UYN_0821/01/2105:2121,
1/01/2177:2184		No text annotation
IL_5UYN_0861/01/2350:2353,
1/01/2364:2367		Double sheared
homologous
IL_5J7L_333
NA
IL_5UYN_0881/01/2453:2454,
1/01/2498:2500		Single stack bend
homologous
IL_4WF9_089
IL_15011.2
IL_5UYN_0901/01/2457:2459,
1/01/2493:2494		Major groove platform
geometric
IL_7A0S_085
IL_48076.8
IL_5UYN_0921/01/2466:2470,
1/01/2480:2484		Double sheared with non-canonical cWW
homologous
IL_5J7L_338
NA
IL_5UYN_0931/01/2507:2508,
1/01/2580:2582		Major groove platform
homologous
IL_4WF9_094
IL_46637.2
IL_5UYN_0951/01/2512:2513,
1/01/2571:2574		Multiple bulged bases
homologous
IL_7RQB_098
NA
IL_5UYN_0961/01/2522:2523,
1/01/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_5UYN_0971/01/2591:2592,
1/01/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_5UYN_0981/01/2636:2640,
1/01/2774:2782		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_5UYN_1881/01/2680:2684,
1/01/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_5UYN_1011/01/2687:2691,
1/01/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_5UYN_1021/01/2695:2696,
1/01/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_5UYN_1031/01/2737:2742,
1/01/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_5UYN_1061/01/2843:2846,
1/01/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_5UYN_1071/01/2847:2852,
1/01/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA
IL_5UYN_1111/02/71:79,
1/02/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA
IL_5UYN_1121/A/30:32,
1/A/552:553		Single bulged G
homologous
IL_6CZR_113
NA
IL_5UYN_1131/A/44:45,
1/A/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_5UYN_1141/A/47:52,
1/A/359:361		No text annotation
homologous
IL_5J7L_003
NA
IL_5UYN_1151/A/54:56,
1/A/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.2
IL_5UYN_1161/A/63:66,
1/A/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_5UYN_1201/A/128:131,
1/A/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_5UYN_1211/A/132:136,
1/A/227:230		Minor groove platform related
homologous
IL_5J7L_010
NA
IL_5UYN_1221/A/144:146,
1/A/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_5UYN_1251/A/242:247,
1/A/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_5UYN_1271/A/292:293,
1/A/304:308		C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_5UYN_1281/A/367:369,
1/A/392:393		Single bulged U
geometric
IL_5J7L_017
NA
IL_5UYN_1301/A/375:376,
1/A/387:389		Single bulged G
geometric
IL_4LFB_016
IL_28408.2
IL_5UYN_1331/A/446:450,
1/A/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_5UYN_1341/A/450:455,
1/A/477:483		No text annotation
geometric
IL_5J7L_023
NA
IL_5UYN_1351/A/504:511,
1/A/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_5UYN_1361/A/515:521,
1/A/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_5UYN_1371/A/569:575,
1/A/880:881		No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_5UYN_1381/A/580:584,
1/A/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_5UYN_1411/A/605:612,
1/A/628:633		No text annotation
homologous
IL_5J7L_030
NA
IL_5UYN_1421/A/654:655,
1/A/751:754		Major groove platform; stack outside cWW
homologous
IL_5J7L_031
NA
IL_5UYN_1441/A/662:666,
1/A/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_5UYN_1911/A/673:677,
1/A/713:717		Triple non-canonical cWW pairs
homologous
IL_5J7L_361
NA
IL_5UYN_1461/A/684:688,
1/A/699:706		Kink-turn
homologous
IL_5J7L_035
NA
IL_5UYN_1471/A/774:778,
1/A/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_5UYN_1481/A/779:783,
1/A/799:803		tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_5UYN_1491/A/887:894,
1/A/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_5UYN_1501/A/922:923,
1/A/1393:1395		Single bulged A
homologous
IL_5J7L_039
NA
IL_5UYN_1511/A/925:927,
1/A/1390:1391		Single bulged G
homologous
IL_5J7L_040
NA
IL_5UYN_1521/A/933:935,
1/A/1380:1384		Minor groove platform
homologous
IL_5J7L_041
NA
IL_5UYN_1531/A/953:954,
1/A/1226:1228		No text annotation
homologous
IL_6CZR_150
NA
IL_5UYN_1921/A/1003:1006,
1/A/1023:1037		No text annotation
IL_5UYN_1931/A/1052:1056,
1/A/1204:1206		No text annotation
homologous
IL_6CZR_154
NA
IL_5UYN_1581/A/1057:1058,
1/A/1199:1203		Minor groove platform
homologous
IL_5J7L_048
NA
IL_5UYN_1591/A/1060:1061,
1/A/1195:1197		Single bulged U
homologous
IL_6CZR_156
NA
IL_5UYN_1601/A/1061:1063,
1/A/1193:1195		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.2
IL_5UYN_1941/A/1247:1253,
1/A/1284:1290		No text annotation
homologous
IL_5J7L_054
NA
IL_5UYN_1651/A/1255:1258,
1/A/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_5UYN_1661/A/1259:1263,
1/A/1272:1276		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_5UYN_1681/A/1399:1401,
1/A/1501:1504		No text annotation
geometric
IL_4V88_463
NA
IL_5UYN_1701/A/1405:1407,
1/A/1494:1496		Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_5UYN_1711/A/1407:1409,
1/A/1491:1494		No text annotation
IL_5UYN_1731/A/1416:1419,
1/A/1481:1484		Double sheared
homologous
IL_6CZR_169
NA

Problematic loops

#loop idProblemSequence
IL_5UYN_002Single bulged A
IL_5UYN_003Minor groove platform
IL_5UYN_177No text annotation
IL_5UYN_005Single stack bend
IL_5UYN_197No text annotation
IL_5UYN_009No text annotation
IL_5UYN_010No text annotation
IL_5UYN_014AAA cross-strand stack
IL_5UYN_023Stack outside cWW
IL_5UYN_026Single bulged G
IL_5UYN_028Isolated non-canonical cWW pair
IL_5UYN_029Double sheared with non-canonical cWW
IL_5UYN_030No text annotation
IL_5UYN_038Tandem non-canonical cWW pairs
IL_5UYN_179Kink-turn
IL_5UYN_039No text annotation
IL_5UYN_040No text annotation
IL_5UYN_180Isolated cWH basepair
IL_5UYN_041Major groove platform
IL_5UYN_181No text annotation
IL_5UYN_182No text annotation
IL_5UYN_043No text annotation
IL_5UYN_047C-loop
IL_5UYN_050No text annotation
IL_5UYN_051UAA/GAN
IL_5UYN_052Tandem non-canonical cWW pairs
IL_5UYN_053tSH-tHW
IL_5UYN_0555x5 Sarcin-Ricin with intercalated A; G-bulge
IL_5UYN_056180 degree turn
IL_5UYN_057Single bulged A
IL_5UYN_058UAA/GAN variation
IL_5UYN_0646x5 Sarcin-Ricin; G-bulge
IL_5UYN_065No text annotation
IL_5UYN_185Triple sheared
IL_5UYN_066Single bulged C
IL_5UYN_069Minor groove platform, major groove intercalation
IL_5UYN_071Major groove minor groove platform; mini C-loop
IL_5UYN_072UAA/GAN related
IL_5UYN_081Tandem non-canonical cWW pairs
IL_5UYN_083Kink-turn related
IL_5UYN_199No text annotation
IL_5UYN_084No text annotation
IL_5UYN_200No text annotation
IL_5UYN_187Tandem non-canonical cWW pairs
IL_5UYN_085Single bulged U
IL_5UYN_087No text annotation
IL_5UYN_089Major groove platform
IL_5UYN_091Major groove minor groove platform with extra cWW
IL_5UYN_094Isolated non-canonical cWW with bulges
IL_5UYN_099Sarcin-Ricin target in LSU H95; G-bulge
IL_5UYN_100C-loop with extra cWW pair
IL_5UYN_104No text annotation
IL_5UYN_105Major groove intercalation
IL_5UYN_189Major groove intercalation
IL_5UYN_108Isolated non-canonical cWW with bulges
IL_5UYN_109No text annotation
IL_5UYN_110Major groove minor groove platform; mini C-loop
IL_5UYN_117Minor groove platform with extra cWW
IL_5UYN_118Minor groove platform
IL_5UYN_201No text annotation
IL_5UYN_119No text annotation
IL_5UYN_123tWH-tWH-tHW-tHW
IL_5UYN_124Minor groove platform
IL_5UYN_126No text annotation
IL_5UYN_190No text annotation
IL_5UYN_129C-loop
IL_5UYN_131No text annotation
IL_5UYN_132No text annotation
IL_5UYN_139Major groove platform
IL_5UYN_140Major groove minor groove platform; mini C-loop
IL_5UYN_143Single stack bend
IL_5UYN_145No text annotation
IL_5UYN_154Minor groove platform
IL_5UYN_155Single stack bend
IL_5UYN_156Single bulged U
IL_5UYN_157Tandem non-canonical cWW pairs
IL_5UYN_161No text annotation
IL_5UYN_162Minor groove platform
IL_5UYN_163No text annotation
IL_5UYN_164No text annotation
IL_5UYN_167No text annotation
IL_5UYN_169No text annotation
IL_5UYN_195Isolated non-canonical cWW pair
IL_5UYN_172Tandem non-canonical cWW pairs
IL_5UYN_174Triple sheared related
IL_5UYN_175Major groove platform with extra cWW
IL_5UYN_196Single bulged A
IL_5UYN_176No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5UYN_0011/01/30:31,
1/01/474:481,
1/01/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_5UYN_0281/01/30:31,
1/01/474:484,
1/01/496:510		No text annotation
homologous
J3_5J7L_066
NA
J3_5UYN_0291/01/32:35,
1/01/445:461,
1/01/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_5UYN_0021/01/56:57,
1/01/70:76,
1/01/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_5UYN_0301/01/297:301,
1/01/316:325,
1/01/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_5UYN_0031/01/683:689,
1/01/773:775,
1/01/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_5UYN_0041/01/698:700,
1/01/732:736,
1/01/760:763		No text annotation
homologous
J3_4WF9_003
J3_69816.1
J3_5UYN_0061/01/1298:1303,
1/01/1625:1627,
1/01/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_5UYN_0081/01/1344:1349,
1/01/1382:1385,
1/01/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_5UYN_0311/01/1424:1429,
1/01/1564:1565,
1/01/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_5UYN_0091/01/2091:2093,
1/01/2196:2200,
1/01/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_5UYN_0321/01/2282:2284,
1/01/2384:2395,
1/01/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_5UYN_0101/01/2295:2299,
1/01/2317:2323,
1/01/2332:2337		No text annotation
J3_5UYN_0111/01/2517:2520,
1/01/2545:2547,
1/01/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_5UYN_0131/01/2812:2815,
1/01/2831:2836,
1/01/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_5UYN_0151/A/46:47,
1/A/361:367,
1/A/393:395		No text annotation
homologous
J3_5J7L_001
NA
J3_5UYN_0331/A/46:52,
1/A/359:367,
1/A/393:395		No text annotation
homologous
J3_5J7L_050
NA
J3_5UYN_0161/A/586:588,
1/A/651:654,
1/A/754:755		No text annotation
homologous
J3_5J7L_002
NA
J3_5UYN_0341/A/586:588,
1/A/651:655,
1/A/751:755		No text annotation
homologous
J3_5J7L_051
NA
J3_5UYN_0171/A/672:673,
1/A/717:725,
1/A/732:734		No text annotation
homologous
J3_5J7L_003
NA
J3_5UYN_0181/A/826:829,
1/A/857:861,
1/A/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_5UYN_0191/A/936:939,
1/A/1344:1350,
1/A/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_5UYN_0201/A/943:946,
1/A/1235:1237,
1/A/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_5UYN_0211/A/955:962,
1/A/973:984,
1/A/1221:1225		No text annotation
homologous
J3_5J7L_006
NA
J3_5UYN_0221/A/990:993,
1/A/1045:1047,
1/A/1210:1215		No text annotation
homologous
J3_5J7L_007
NA
J3_5UYN_0351/A/990:997,
1/A/1044:1047,
1/A/1210:1215		No text annotation
homologous
J3_5J7L_053
NA
J3_5UYN_0231/A/1003:1006,
1/A/1023:1028,
1/A/1033:1037		No text annotation
J3_5UYN_0241/A/1063:1068,
1/A/1107:1113,
1/A/1187:1193		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J3_5UYN_0361/A/1073:1074,
1/A/1083:1086,
1/A/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_5UYN_0261/A/1116:1118,
1/A/1155:1158,
1/A/1181:1184		No text annotation
homologous
J3_5J7L_010
NA
J3_5UYN_0371/A/1116:1118,
1/A/1155:1161,
1/A/1175:1184		No text annotation
homologous
J3_5J7L_054
NA
J4_5UYN_0011/01/268:269,
1/01/370:375,
1/01/399:406,
1/01/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_5UYN_0021/01/601:604,
1/01/624:628,
1/01/635:638,
1/01/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_5UYN_0031/01/1270:1276,
1/01/1294:1295,
1/01/1645:1648,
1/01/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_5UYN_0041/01/1310:1314,
1/01/1338:1343,
1/01/1404:1405,
1/01/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_5UYN_0051/01/1313:1314,
1/01/1338:1343,
1/01/1404:1405,
1/01/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_5UYN_0071/01/1772:1776,
1/01/1788:1792,
1/01/1827:1830,
1/01/1975:1979		No text annotation
homologous
J4_4WF9_007
J4_61477.6
J4_5UYN_0081/01/1833:1835,
1/01/1905:1906,
1/01/1924:1933,
1/01/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_5UYN_0091/01/2285:2289,
1/01/2343:2347,
1/01/2370:2372,
1/01/2381:2383		No text annotation
homologous
J4_5J7L_027
NA
J4_5UYN_0101/01/2643:2646,
1/01/2674:2676,
1/01/2731:2735,
1/01/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J4_5UYN_0121/A/142:144,
1/A/178:184,
1/A/193:198,
1/A/219:221		No text annotation
homologous
J4_5J7L_002
NA
J4_5UYN_0131/A/575:577,
1/A/764:769,
1/A/810:821,
1/A/879:880		No text annotation
homologous
J4_5J7L_003
NA
J5_5UYN_0011/01/47:54,
1/01/116:121,
1/01/130:131,
1/01/148:150,
1/01/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_5UYN_0021/01/531:533,
1/01/560:564,
1/01/577:579,
1/01/1261:1262,
1/01/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_5UYN_0031/01/584:589,
1/01/668:671,
1/01/809:812,
1/01/1195:1196,
1/01/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_5UYN_0041/01/1674:1682,
1/01/1706:1707,
1/01/1751:1752,
1/01/1756:1764,
1/01/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_5UYN_0051/01/2057:2064,
1/01/2446:2453,
1/01/2500:2507,
1/01/2582:2588,
1/01/2606:2611		No text annotation
J5_5UYN_0061/01/2074:2077,
1/01/2243:2246,
1/01/2258:2259,
1/01/2281:2282,
1/01/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J5_5UYN_0071/A/36:39,
1/A/403:406,
1/A/436:440,
1/A/497:500,
1/A/545:548		No text annotation
homologous
J5_5J7L_001
NA
J5_5UYN_0081/A/36:39,
1/A/403:406,
1/A/436:442,
1/A/492:500,
1/A/545:548		No text annotation
homologous
J5_5J7L_002
NA
J5_5UYN_0091/A/58:61,
1/A/106:113,
1/A/314:316,
1/A/337:339,
1/A/350:354		No text annotation
homologous
J5_6CZR_021
NA
J6_5UYN_0011/01/45:46,
1/01/179:183,
1/01/214:224,
1/01/231:235,
1/01/262:266,
1/01/426:433		No text annotation
J6_5UYN_0021/01/2074:2077,
1/01/2243:2246,
1/01/2258:2259,
1/01/2281:2284,
1/01/2384:2395,
1/01/2421:2435		No text annotation
J7_5UYN_0011/01/8:15,
1/01/525:531,
1/01/2018:2023,
1/01/2040:2043,
1/01/2625:2630,
1/01/2788:2789,
1/01/2894:2895		No text annotation
J7_5UYN_0021/01/817:822,
1/01/835:838,
1/01/940:946,
1/01/971:976,
1/01/987:991,
1/01/1163:1164,
1/01/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_5UYN_005No text annotation
J3_5UYN_007No text annotation
J3_5UYN_012No text annotation
J3_5UYN_014No text annotation
J3_5UYN_025No text annotation
J3_5UYN_027No text annotation
J4_5UYN_006No text annotation
J4_5UYN_011No text annotation
J4_5UYN_014tRNA junction
J4_5UYN_015tRNA junction
J4_5UYN_016tRNA junction

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