HL_5UYP_014

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

5UYP|1|01|C|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_014 not in the Motif Atlas

Homologous match to HL_5J7L_148

Geometric discrepancy: 0.1109

The information below is about HL_5J7L_148

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5UYP|1|01|C|487
5UYP|1|01|G|488
5UYP|1|01|G|489
5UYP|1|01|C|490
5UYP|1|01|G|491
5UYP|1|01|A|492
5UYP|1|01|G|493

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L22