HL_5UYP_024

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_024 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2919

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5UYP|1|01|U|884
5UYP|1|01|C|885
5UYP|1|01|A|886
5UYP|1|01|U|887
5UYP|1|01|C|888
5UYP|1|01|C|889
5UYP|1|01|C|890
5UYP|1|01|G|891
5UYP|1|01|A|892

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13