HL_5UYP_055
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGCAAUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_055 not in the Motif Atlas
- Homologous match to HL_5J7L_189
- Geometric discrepancy: 0.1213
- The information below is about HL_5J7L_189
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
5UYP|1|01|U|2324
5UYP|1|01|G|2325
5UYP|1|01|C|2326
5UYP|1|01|A|2327
5UYP|1|01|A|2328
5UYP|1|01|U|2329
5UYP|1|01|G|2330
5UYP|1|01|G|2331
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 07
- 50S ribosomal protein L5
- Chain 15
- 50S ribosomal protein L16
- Chain 25
- 50S ribosomal protein L27
- Chain W
- Transfer RNA; tRNA
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