HL_5UYP_075

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

5UYP|1|A|U|209

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_075 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.3411

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

5UYP|1|A|C|206
5UYP|1|A|C|207
5UYP|1|A|U|208
5UYP|1|A|U|209
5UYP|1|A|C|210
5UYP|1|A|G|211
5UYP|1|A|G|212
5UYP|1|A|G|213

Current chains

Chain A

16S ribosomal RNA

Nearby chains