HL_5UYP_078

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1575

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5UYP|1|A|A|320
5UYP|1|A|A|321
5UYP|1|A|C|322
5UYP|1|A|U|323
5UYP|1|A|G|324
5UYP|1|A|A|325
5UYP|1|A|G|326
5UYP|1|A|A|327
5UYP|1|A|C|328
5UYP|1|A|A|329
5UYP|1|A|C|330
5UYP|1|A|G|331
5UYP|1|A|G|332
5UYP|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20